sklearn.neighbors
.LocalOutlierFactor¶
- class sklearn.neighbors.LocalOutlierFactor(n_neighbors=20, *, algorithm='auto', leaf_size=30, metric='minkowski', p=2, metric_params=None, contamination='auto', novelty=False, n_jobs=None)[source]¶
Unsupervised Outlier Detection using Local Outlier Factor (LOF)
The anomaly score of each sample is called Local Outlier Factor. It measures the local deviation of density of a given sample with respect to its neighbors. It is local in that the anomaly score depends on how isolated the object is with respect to the surrounding neighborhood. More precisely, locality is given by k-nearest neighbors, whose distance is used to estimate the local density. By comparing the local density of a sample to the local densities of its neighbors, one can identify samples that have a substantially lower density than their neighbors. These are considered outliers.
New in version 0.19.
- Parameters
- n_neighborsint, default=20
Number of neighbors to use by default for
kneighbors
queries. If n_neighbors is larger than the number of samples provided, all samples will be used.- algorithm{‘auto’, ‘ball_tree’, ‘kd_tree’, ‘brute’}, default=’auto’
Algorithm used to compute the nearest neighbors:
‘ball_tree’ will use
BallTree
‘kd_tree’ will use
KDTree
‘brute’ will use a brute-force search.
‘auto’ will attempt to decide the most appropriate algorithm based on the values passed to
fit
method.
Note: fitting on sparse input will override the setting of this parameter, using brute force.
- leaf_sizeint, default=30
Leaf size passed to
BallTree
orKDTree
. This can affect the speed of the construction and query, as well as the memory required to store the tree. The optimal value depends on the nature of the problem.- metricstr or callable, default=’minkowski’
metric used for the distance computation. Any metric from scikit-learn or scipy.spatial.distance can be used.
If metric is “precomputed”, X is assumed to be a distance matrix and must be square. X may be a sparse matrix, in which case only “nonzero” elements may be considered neighbors.
If metric is a callable function, it is called on each pair of instances (rows) and the resulting value recorded. The callable should take two arrays as input and return one value indicating the distance between them. This works for Scipy’s metrics, but is less efficient than passing the metric name as a string.
Valid values for metric are:
from scikit-learn: [‘cityblock’, ‘cosine’, ‘euclidean’, ‘l1’, ‘l2’, ‘manhattan’]
from scipy.spatial.distance: [‘braycurtis’, ‘canberra’, ‘chebyshev’, ‘correlation’, ‘dice’, ‘hamming’, ‘jaccard’, ‘kulsinski’, ‘mahalanobis’, ‘minkowski’, ‘rogerstanimoto’, ‘russellrao’, ‘seuclidean’, ‘sokalmichener’, ‘sokalsneath’, ‘sqeuclidean’, ‘yule’]
See the documentation for scipy.spatial.distance for details on these metrics: https://docs.scipy.org/doc/scipy/reference/spatial.distance.html
- pint, default=2
Parameter for the Minkowski metric from
sklearn.metrics.pairwise.pairwise_distances
. When p = 1, this is equivalent to using manhattan_distance (l1), and euclidean_distance (l2) for p = 2. For arbitrary p, minkowski_distance (l_p) is used.- metric_paramsdict, default=None
Additional keyword arguments for the metric function.
- contamination‘auto’ or float, default=’auto’
The amount of contamination of the data set, i.e. the proportion of outliers in the data set. When fitting this is used to define the threshold on the scores of the samples.
if ‘auto’, the threshold is determined as in the original paper,
if a float, the contamination should be in the range (0, 0.5].
Changed in version 0.22: The default value of
contamination
changed from 0.1 to'auto'
.- noveltybool, default=False
By default, LocalOutlierFactor is only meant to be used for outlier detection (novelty=False). Set novelty to True if you want to use LocalOutlierFactor for novelty detection. In this case be aware that you should only use predict, decision_function and score_samples on new unseen data and not on the training set.
New in version 0.20.
- n_jobsint, default=None
The number of parallel jobs to run for neighbors search.
None
means 1 unless in ajoblib.parallel_backend
context.-1
means using all processors. See Glossary for more details.
- Attributes
- negative_outlier_factor_ndarray of shape (n_samples,)
The opposite LOF of the training samples. The higher, the more normal. Inliers tend to have a LOF score close to 1 (
negative_outlier_factor_
close to -1), while outliers tend to have a larger LOF score.The local outlier factor (LOF) of a sample captures its supposed ‘degree of abnormality’. It is the average of the ratio of the local reachability density of a sample and those of its k-nearest neighbors.
- n_neighbors_int
The actual number of neighbors used for
kneighbors
queries.- offset_float
Offset used to obtain binary labels from the raw scores. Observations having a negative_outlier_factor smaller than
offset_
are detected as abnormal. The offset is set to -1.5 (inliers score around -1), except when a contamination parameter different than “auto” is provided. In that case, the offset is defined in such a way we obtain the expected number of outliers in training.New in version 0.20.
- effective_metric_str
The effective metric used for the distance computation.
- effective_metric_params_dict
The effective additional keyword arguments for the metric function.
- n_features_in_int
Number of features seen during fit.
New in version 0.24.
- feature_names_in_ndarray of shape (
n_features_in_
,) Names of features seen during fit. Defined only when
X
has feature names that are all strings.New in version 1.0.
- n_samples_fit_int
It is the number of samples in the fitted data.
References
- 1
Breunig, M. M., Kriegel, H. P., Ng, R. T., & Sander, J. (2000, May). LOF: identifying density-based local outliers. In ACM sigmod record.
Examples
>>> import numpy as np >>> from sklearn.neighbors import LocalOutlierFactor >>> X = [[-1.1], [0.2], [101.1], [0.3]] >>> clf = LocalOutlierFactor(n_neighbors=2) >>> clf.fit_predict(X) array([ 1, 1, -1, 1]) >>> clf.negative_outlier_factor_ array([ -0.9821..., -1.0370..., -73.3697..., -0.9821...])
Methods
Shifted opposite of the Local Outlier Factor of X.
fit
(X[, y])Fit the local outlier factor detector from the training dataset.
fit_predict
(X[, y])Fits the model to the training set X and returns the labels.
get_params
([deep])Get parameters for this estimator.
kneighbors
([X, n_neighbors, return_distance])Find the K-neighbors of a point.
kneighbors_graph
([X, n_neighbors, mode])Compute the (weighted) graph of k-Neighbors for points in X.
predict
([X])Predict the labels (1 inlier, -1 outlier) of X according to LOF.
Opposite of the Local Outlier Factor of X.
set_params
(**params)Set the parameters of this estimator.
- decision_function(X)[source]¶
Shifted opposite of the Local Outlier Factor of X.
Bigger is better, i.e. large values correspond to inliers.
Only available for novelty detection (when novelty is set to True). The shift offset allows a zero threshold for being an outlier. The argument X is supposed to contain new data: if X contains a point from training, it considers the later in its own neighborhood. Also, the samples in X are not considered in the neighborhood of any point.
- Parameters
- Xarray-like of shape (n_samples, n_features)
The query sample or samples to compute the Local Outlier Factor w.r.t. the training samples.
- Returns
- shifted_opposite_lof_scoresndarray of shape (n_samples,)
The shifted opposite of the Local Outlier Factor of each input samples. The lower, the more abnormal. Negative scores represent outliers, positive scores represent inliers.
- fit(X, y=None)[source]¶
Fit the local outlier factor detector from the training dataset.
- Parameters
- X{array-like, sparse matrix} of shape (n_samples, n_features) or (n_samples, n_samples) if metric=’precomputed’
Training data.
- yIgnored
Not used, present for API consistency by convention.
- Returns
- selfLocalOutlierFactor
The fitted local outlier factor detector.
- fit_predict(X, y=None)[source]¶
Fits the model to the training set X and returns the labels.
Not available for novelty detection (when novelty is set to True). Label is 1 for an inlier and -1 for an outlier according to the LOF score and the contamination parameter.
- Parameters
- Xarray-like of shape (n_samples, n_features), default=None
The query sample or samples to compute the Local Outlier Factor w.r.t. to the training samples.
- yIgnored
Not used, present for API consistency by convention.
- Returns
- is_inlierndarray of shape (n_samples,)
Returns -1 for anomalies/outliers and 1 for inliers.
- get_params(deep=True)[source]¶
Get parameters for this estimator.
- Parameters
- deepbool, default=True
If True, will return the parameters for this estimator and contained subobjects that are estimators.
- Returns
- paramsdict
Parameter names mapped to their values.
- kneighbors(X=None, n_neighbors=None, return_distance=True)[source]¶
Find the K-neighbors of a point.
Returns indices of and distances to the neighbors of each point.
- Parameters
- Xarray-like, shape (n_queries, n_features), or (n_queries, n_indexed) if metric == ‘precomputed’, default=None
The query point or points. If not provided, neighbors of each indexed point are returned. In this case, the query point is not considered its own neighbor.
- n_neighborsint, default=None
Number of neighbors required for each sample. The default is the value passed to the constructor.
- return_distancebool, default=True
Whether or not to return the distances.
- Returns
- neigh_distndarray of shape (n_queries, n_neighbors)
Array representing the lengths to points, only present if return_distance=True.
- neigh_indndarray of shape (n_queries, n_neighbors)
Indices of the nearest points in the population matrix.
Examples
In the following example, we construct a NearestNeighbors class from an array representing our data set and ask who’s the closest point to [1,1,1]
>>> samples = [[0., 0., 0.], [0., .5, 0.], [1., 1., .5]] >>> from sklearn.neighbors import NearestNeighbors >>> neigh = NearestNeighbors(n_neighbors=1) >>> neigh.fit(samples) NearestNeighbors(n_neighbors=1) >>> print(neigh.kneighbors([[1., 1., 1.]])) (array([[0.5]]), array([[2]]))
As you can see, it returns [[0.5]], and [[2]], which means that the element is at distance 0.5 and is the third element of samples (indexes start at 0). You can also query for multiple points:
>>> X = [[0., 1., 0.], [1., 0., 1.]] >>> neigh.kneighbors(X, return_distance=False) array([[1], [2]]...)
- kneighbors_graph(X=None, n_neighbors=None, mode='connectivity')[source]¶
Compute the (weighted) graph of k-Neighbors for points in X.
- Parameters
- Xarray-like of shape (n_queries, n_features), or (n_queries, n_indexed) if metric == ‘precomputed’, default=None
The query point or points. If not provided, neighbors of each indexed point are returned. In this case, the query point is not considered its own neighbor. For
metric='precomputed'
the shape should be (n_queries, n_indexed). Otherwise the shape should be (n_queries, n_features).- n_neighborsint, default=None
Number of neighbors for each sample. The default is the value passed to the constructor.
- mode{‘connectivity’, ‘distance’}, default=’connectivity’
Type of returned matrix: ‘connectivity’ will return the connectivity matrix with ones and zeros, in ‘distance’ the edges are distances between points, type of distance depends on the selected metric parameter in NearestNeighbors class.
- Returns
- Asparse-matrix of shape (n_queries, n_samples_fit)
n_samples_fit
is the number of samples in the fitted data.A[i, j]
gives the weight of the edge connectingi
toj
. The matrix is of CSR format.
See also
NearestNeighbors.radius_neighbors_graph
Compute the (weighted) graph of Neighbors for points in X.
Examples
>>> X = [[0], [3], [1]] >>> from sklearn.neighbors import NearestNeighbors >>> neigh = NearestNeighbors(n_neighbors=2) >>> neigh.fit(X) NearestNeighbors(n_neighbors=2) >>> A = neigh.kneighbors_graph(X) >>> A.toarray() array([[1., 0., 1.], [0., 1., 1.], [1., 0., 1.]])
- predict(X=None)[source]¶
Predict the labels (1 inlier, -1 outlier) of X according to LOF.
Only available for novelty detection (when novelty is set to True). This method allows to generalize prediction to new observations (not in the training set).
- Parameters
- Xarray-like of shape (n_samples, n_features)
The query sample or samples to compute the Local Outlier Factor w.r.t. to the training samples.
- Returns
- is_inlierndarray of shape (n_samples,)
Returns -1 for anomalies/outliers and +1 for inliers.
- score_samples(X)[source]¶
Opposite of the Local Outlier Factor of X.
It is the opposite as bigger is better, i.e. large values correspond to inliers.
Only available for novelty detection (when novelty is set to True). The argument X is supposed to contain new data: if X contains a point from training, it considers the later in its own neighborhood. Also, the samples in X are not considered in the neighborhood of any point. The score_samples on training data is available by considering the the
negative_outlier_factor_
attribute.- Parameters
- Xarray-like of shape (n_samples, n_features)
The query sample or samples to compute the Local Outlier Factor w.r.t. the training samples.
- Returns
- opposite_lof_scoresndarray of shape (n_samples,)
The opposite of the Local Outlier Factor of each input samples. The lower, the more abnormal.
- set_params(**params)[source]¶
Set the parameters of this estimator.
The method works on simple estimators as well as on nested objects (such as
Pipeline
). The latter have parameters of the form<component>__<parameter>
so that it’s possible to update each component of a nested object.- Parameters
- **paramsdict
Estimator parameters.
- Returns
- selfestimator instance
Estimator instance.