Developers’ Tips and Tricks¶

Folding and unfolding outdated diffs on pull requests¶

GitHub hides discussions on PRs when the corresponding lines of code have been changed in the mean while. This userscript provides a shortcut (Control-Alt-P at the time of writing but look at the code to be sure) to unfold all such hidden discussions at once, so you can catch up.

Checking out pull requests as remote-tracking branches¶

In your local fork, add to your .git/config, under the [remote "upstream"] heading, the line:

fetch = +refs/pull/*/head:refs/remotes/upstream/pr/*

You may then use git checkout pr/PR_NUMBER to navigate to the code of the pull-request with the given number. (Read more in this gist.)

Display code coverage in pull requests¶

To overlay the code coverage reports generated by the CodeCov continuous integration, consider this browser extension. The coverage of each line will be displayed as a color background behind the line number.

Useful pytest aliases and flags¶

The full test suite takes fairly long to run. For faster iterations, it is possibly to select a subset of tests using pytest selectors. In particular, one can run a single test based on its node ID:

pytest -v sklearn/linear_model/tests/test_logistic.py::test_sparsify

or use the -k pytest parameter to select tests based on their name. For instance,:

pytest sklearn/tests/test_common.py -v -k LogisticRegression

will run all common tests for the LogisticRegression estimator.

When a unit test fails, the following tricks can make debugging easier:

1. The command line argument pytest -l instructs pytest to print the local variables when a failure occurs.

2. The argument pytest --pdb drops into the Python debugger on failure. To instead drop into the rich IPython debugger ipdb, you may set up a shell alias to:

pytest --pdbcls=IPython.terminal.debugger:TerminalPdb --capture no

Other pytest options that may become useful include:

• -x which exits on the first failed test

• --lf to rerun the tests that failed on the previous run

• --ff to rerun all previous tests, running the ones that failed first

• -s so that pytest does not capture the output of print() statements

• --tb=short or --tb=line to control the length of the logs

• --runxfail also run tests marked as a known failure (XFAIL) and report errors.

Since our continuous integration tests will error if FutureWarning isn’t properly caught, it is also recommended to run pytest along with the -Werror::FutureWarning flag.

Standard replies for reviewing¶

It may be helpful to store some of these in GitHub’s saved replies for reviewing:

Issue: Usage questions

You are asking a usage question. The issue tracker is for bugs and new features. For usage questions, it is recommended to try [Stack Overflow](https://stackoverflow.com/questions/tagged/scikit-learn) or [the Mailing List](https://mail.python.org/mailman/listinfo/scikit-learn).

Unfortunately, we need to close this issue as this issue tracker is a communication tool used for the development of scikit-learn. The additional activity created by usage questions crowds it too much and impedes this development. The conversation can continue here, however there is no guarantee that is will receive attention from core developers.

Issue: You’re welcome to update the docs

Please feel free to offer a pull request updating the documentation if you feel it could be improved.

Issue: Self-contained example for bug

Please provide [self-contained example code](https://stackoverflow.com/help/mcve), including imports and data (if possible), so that other contributors can just run it and reproduce your issue. Ideally your example code should be minimal.

Issue: Software versions

To help diagnose your issue, please paste the output of:
```py
import sklearn; sklearn.show_versions()
```
Thanks.

Issue: Code blocks

Readability can be greatly improved if you [format](https://help.github.com/articles/creating-and-highlighting-code-blocks/) your code snippets and complete error messages appropriately. For example:

    ```python
    print(something)
    ```
generates:
```python
print(something)
```
And:

    ```pytb
    Traceback (most recent call last):
      File "<stdin>", line 1, in <module>
    ImportError: No module named 'hello'
    ```
generates:
```pytb
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
ImportError: No module named 'hello'
```
You can edit your issue descriptions and comments at any time to improve readability. This helps maintainers a lot. Thanks!

Issue/Comment: Linking to code

Friendly advice: for clarity's sake, you can link to code like [this](https://help.github.com/articles/creating-a-permanent-link-to-a-code-snippet/).

Issue/Comment: Linking to comments

Please use links to comments, which make it a lot easier to see what you are referring to, rather than just linking to the issue. See [this](https://stackoverflow.com/questions/25163598/how-do-i-reference-a-specific-issue-comment-on-github) for more details.

PR-NEW: Better description and title

Thanks for the pull request! Please make the title of the PR more descriptive. The title will become the commit message when this is merged. You should state what issue (or PR) it fixes/resolves in the description using the syntax described [here](http://scikit-learn.org/dev/developers/contributing.html#contributing-pull-requests).

PR-NEW: Fix #

Please use "Fix #issueNumber" in your PR description (and you can do it more than once). This way the associated issue gets closed automatically when the PR is merged. For more details, look at [this](https://github.com/blog/1506-closing-issues-via-pull-requests).

PR-NEW or Issue: Maintenance cost

Every feature we include has a [maintenance cost](http://scikit-learn.org/dev/faq.html#why-are-you-so-selective-on-what-algorithms-you-include-in-scikit-learn). Our maintainers are mostly volunteers. For a new feature to be included, we need evidence that it is often useful and, ideally, [well-established](http://scikit-learn.org/dev/faq.html#what-are-the-inclusion-criteria-for-new-algorithms) in the literature or in practice. That doesn't stop you implementing it for yourself and publishing it in a separate repository, or even [scikit-learn-contrib](https://scikit-learn-contrib.github.io).

PR-WIP: What’s needed before merge?

Please clarify (perhaps as a TODO list in the PR description) what work you believe still needs to be done before it can be reviewed for merge. When it is ready, please prefix the PR title with `[MRG]`.

PR-WIP: Regression test needed

Please add a [non-regression test](https://en.wikipedia.org/wiki/Non-regression_testing) that would fail at main but pass in this PR.

PR-WIP: PEP8

You have some [PEP8](https://www.python.org/dev/peps/pep-0008/) violations, whose details you can see in the Circle CI `lint` job. It might be worth configuring your code editor to check for such errors on the fly, so you can catch them before committing.

PR-MRG: Patience

Before merging, we generally require two core developers to agree that your pull request is desirable and ready. [Please be patient](http://scikit-learn.org/dev/faq.html#why-is-my-pull-request-not-getting-any-attention), as we mostly rely on volunteered time from busy core developers. (You are also welcome to help us out with [reviewing other PRs](http://scikit-learn.org/dev/developers/contributing.html#code-review-guidelines).)

PR-MRG: Add to what’s new

Please add an entry to the change log at `doc/whats_new/v*.rst`. Like the other entries there, please reference this pull request with `:pr:` and credit yourself (and other contributors if applicable) with `:user:`.

PR: Don’t change unrelated

Please do not change unrelated lines. It makes your contribution harder to review and may introduce merge conflicts to other pull requests.