Note
Click here to download the full example code or to run this example in your browser via Binder
Parameter estimation using grid search with cross-validation¶
This examples shows how a classifier is optimized by cross-validation,
which is done using the GridSearchCV object
on a development set that comprises only half of the available labeled data.
The performance of the selected hyper-parameters and trained model is then measured on a dedicated evaluation set that was not used during the model selection step.
More details on tools available for model selection can be found in the sections on Cross-validation: evaluating estimator performance and Tuning the hyper-parameters of an estimator.
Out:
# Tuning hyper-parameters for precision
Best parameters set found on development set:
{'C': 10, 'gamma': 0.001, 'kernel': 'rbf'}
Grid scores on development set:
0.986 (+/-0.016) for {'C': 1, 'gamma': 0.001, 'kernel': 'rbf'}
0.959 (+/-0.028) for {'C': 1, 'gamma': 0.0001, 'kernel': 'rbf'}
0.988 (+/-0.017) for {'C': 10, 'gamma': 0.001, 'kernel': 'rbf'}
0.982 (+/-0.026) for {'C': 10, 'gamma': 0.0001, 'kernel': 'rbf'}
0.988 (+/-0.017) for {'C': 100, 'gamma': 0.001, 'kernel': 'rbf'}
0.983 (+/-0.026) for {'C': 100, 'gamma': 0.0001, 'kernel': 'rbf'}
0.988 (+/-0.017) for {'C': 1000, 'gamma': 0.001, 'kernel': 'rbf'}
0.983 (+/-0.026) for {'C': 1000, 'gamma': 0.0001, 'kernel': 'rbf'}
0.974 (+/-0.012) for {'C': 1, 'kernel': 'linear'}
0.974 (+/-0.012) for {'C': 10, 'kernel': 'linear'}
0.974 (+/-0.012) for {'C': 100, 'kernel': 'linear'}
0.974 (+/-0.012) for {'C': 1000, 'kernel': 'linear'}
Detailed classification report:
The model is trained on the full development set.
The scores are computed on the full evaluation set.
precision recall f1-score support
0 1.00 1.00 1.00 89
1 0.97 1.00 0.98 90
2 0.99 0.98 0.98 92
3 1.00 0.99 0.99 93
4 1.00 1.00 1.00 76
5 0.99 0.98 0.99 108
6 0.99 1.00 0.99 89
7 0.99 1.00 0.99 78
8 1.00 0.98 0.99 92
9 0.99 0.99 0.99 92
accuracy 0.99 899
macro avg 0.99 0.99 0.99 899
weighted avg 0.99 0.99 0.99 899
# Tuning hyper-parameters for recall
Best parameters set found on development set:
{'C': 10, 'gamma': 0.001, 'kernel': 'rbf'}
Grid scores on development set:
0.986 (+/-0.019) for {'C': 1, 'gamma': 0.001, 'kernel': 'rbf'}
0.957 (+/-0.028) for {'C': 1, 'gamma': 0.0001, 'kernel': 'rbf'}
0.987 (+/-0.019) for {'C': 10, 'gamma': 0.001, 'kernel': 'rbf'}
0.981 (+/-0.028) for {'C': 10, 'gamma': 0.0001, 'kernel': 'rbf'}
0.987 (+/-0.019) for {'C': 100, 'gamma': 0.001, 'kernel': 'rbf'}
0.982 (+/-0.026) for {'C': 100, 'gamma': 0.0001, 'kernel': 'rbf'}
0.987 (+/-0.019) for {'C': 1000, 'gamma': 0.001, 'kernel': 'rbf'}
0.982 (+/-0.026) for {'C': 1000, 'gamma': 0.0001, 'kernel': 'rbf'}
0.971 (+/-0.010) for {'C': 1, 'kernel': 'linear'}
0.971 (+/-0.010) for {'C': 10, 'kernel': 'linear'}
0.971 (+/-0.010) for {'C': 100, 'kernel': 'linear'}
0.971 (+/-0.010) for {'C': 1000, 'kernel': 'linear'}
Detailed classification report:
The model is trained on the full development set.
The scores are computed on the full evaluation set.
precision recall f1-score support
0 1.00 1.00 1.00 89
1 0.97 1.00 0.98 90
2 0.99 0.98 0.98 92
3 1.00 0.99 0.99 93
4 1.00 1.00 1.00 76
5 0.99 0.98 0.99 108
6 0.99 1.00 0.99 89
7 0.99 1.00 0.99 78
8 1.00 0.98 0.99 92
9 0.99 0.99 0.99 92
accuracy 0.99 899
macro avg 0.99 0.99 0.99 899
weighted avg 0.99 0.99 0.99 899
from sklearn import datasets
from sklearn.model_selection import train_test_split
from sklearn.model_selection import GridSearchCV
from sklearn.metrics import classification_report
from sklearn.svm import SVC
print(__doc__)
# Loading the Digits dataset
digits = datasets.load_digits()
# To apply an classifier on this data, we need to flatten the image, to
# turn the data in a (samples, feature) matrix:
n_samples = len(digits.images)
X = digits.images.reshape((n_samples, -1))
y = digits.target
# Split the dataset in two equal parts
X_train, X_test, y_train, y_test = train_test_split(
X, y, test_size=0.5, random_state=0)
# Set the parameters by cross-validation
tuned_parameters = [{'kernel': ['rbf'], 'gamma': [1e-3, 1e-4],
'C': [1, 10, 100, 1000]},
{'kernel': ['linear'], 'C': [1, 10, 100, 1000]}]
scores = ['precision', 'recall']
for score in scores:
print("# Tuning hyper-parameters for %s" % score)
print()
clf = GridSearchCV(
SVC(), tuned_parameters, scoring='%s_macro' % score
)
clf.fit(X_train, y_train)
print("Best parameters set found on development set:")
print()
print(clf.best_params_)
print()
print("Grid scores on development set:")
print()
means = clf.cv_results_['mean_test_score']
stds = clf.cv_results_['std_test_score']
for mean, std, params in zip(means, stds, clf.cv_results_['params']):
print("%0.3f (+/-%0.03f) for %r"
% (mean, std * 2, params))
print()
print("Detailed classification report:")
print()
print("The model is trained on the full development set.")
print("The scores are computed on the full evaluation set.")
print()
y_true, y_pred = y_test, clf.predict(X_test)
print(classification_report(y_true, y_pred))
print()
# Note the problem is too easy: the hyperparameter plateau is too flat and the
# output model is the same for precision and recall with ties in quality.
Total running time of the script: ( 0 minutes 5.378 seconds)
