Poisson regression and non-normal loss¶

The French Motor Third-Party Liability Claims dataset¶

Let’s load the motor claim dataset from OpenML: https://www.openml.org/d/41214

from sklearn.datasets import fetch_openml


df = fetch_openml(data_id=41214, as_frame=True).frame
df

Out:

/home/circleci/project/sklearn/datasets/_openml.py:754: UserWarning: Version 1 of dataset freMTPL2freq is inactive, meaning that issues have been found in the dataset. Try using a newer version from this URL: https://www.openml.org/data/v1/download/20649148/freMTPL2freq.arff
  warn("Version {} of dataset {} is inactive, meaning that issues have "

The number of claims (ClaimNb) is a positive integer that can be modeled as a Poisson distribution. It is then assumed to be the number of discrete events occurring with a constant rate in a given time interval (Exposure, in units of years).

Here we want to model the frequency y = ClaimNb / Exposure conditionally on X via a (scaled) Poisson distribution, and use Exposure as sample_weight.

df["Frequency"] = df["ClaimNb"] / df["Exposure"]

print("Average Frequency = {}"
      .format(np.average(df["Frequency"], weights=df["Exposure"])))

print("Fraction of exposure with zero claims = {0:.1%}"
      .format(df.loc[df["ClaimNb"] == 0, "Exposure"].sum() /
              df["Exposure"].sum()))

fig, (ax0, ax1, ax2) = plt.subplots(ncols=3, figsize=(16, 4))
ax0.set_title("Number of claims")
_ = df["ClaimNb"].hist(bins=30, log=True, ax=ax0)
ax1.set_title("Exposure in years")
_ = df["Exposure"].hist(bins=30, log=True, ax=ax1)
ax2.set_title("Frequency (number of claims per year)")
_ = df["Frequency"].hist(bins=30, log=True, ax=ax2)

Out:

Average Frequency = 0.10070308464041304
Fraction of exposure with zero claims = 93.9%

The remaining columns can be used to predict the frequency of claim events. Those columns are very heterogeneous with a mix of categorical and numeric variables with different scales, possibly very unevenly distributed.

In order to fit linear models with those predictors it is therefore necessary to perform standard feature transformations as follows:

from sklearn.pipeline import make_pipeline
from sklearn.preprocessing import FunctionTransformer, OneHotEncoder
from sklearn.preprocessing import StandardScaler, KBinsDiscretizer
from sklearn.compose import ColumnTransformer


log_scale_transformer = make_pipeline(
    FunctionTransformer(np.log, validate=False),
    StandardScaler()
)

linear_model_preprocessor = ColumnTransformer(
    [
        ("passthrough_numeric", "passthrough",
            ["BonusMalus"]),
        ("binned_numeric", KBinsDiscretizer(n_bins=10),
            ["VehAge", "DrivAge"]),
        ("log_scaled_numeric", log_scale_transformer,
            ["Density"]),
        ("onehot_categorical", OneHotEncoder(),
            ["VehBrand", "VehPower", "VehGas", "Region", "Area"]),
    ],
    remainder="drop",
)

A constant prediction baseline¶

It is worth noting that more than 93% of policyholders have zero claims. If we were to convert this problem into a binary classification task, it would be significantly imbalanced, and even a simplistic model that would only predict mean can achieve an accuracy of 93%.

To evaluate the pertinence of the used metrics, we will consider as a baseline a “dummy” estimator that constantly predicts the mean frequency of the training sample.

from sklearn.dummy import DummyRegressor
from sklearn.pipeline import Pipeline
from sklearn.model_selection import train_test_split

df_train, df_test = train_test_split(df, test_size=0.33, random_state=0)

dummy = Pipeline([
    ("preprocessor", linear_model_preprocessor),
    ("regressor", DummyRegressor(strategy='mean')),
]).fit(df_train, df_train["Frequency"],
       regressor__sample_weight=df_train["Exposure"])

Let’s compute the performance of this constant prediction baseline with 3 different regression metrics:

from sklearn.metrics import mean_squared_error
from sklearn.metrics import mean_absolute_error
from sklearn.metrics import mean_poisson_deviance


def score_estimator(estimator, df_test):
    """Score an estimator on the test set."""
    y_pred = estimator.predict(df_test)

    print("MSE: %.3f" %
          mean_squared_error(df_test["Frequency"], y_pred,
                             sample_weight=df_test["Exposure"]))
    print("MAE: %.3f" %
          mean_absolute_error(df_test["Frequency"], y_pred,
                              sample_weight=df_test["Exposure"]))

    # Ignore non-positive predictions, as they are invalid for
    # the Poisson deviance.
    mask = y_pred > 0
    if (~mask).any():
        n_masked, n_samples = (~mask).sum(), mask.shape[0]
        print(f"WARNING: Estimator yields invalid, non-positive predictions "
              f" for {n_masked} samples out of {n_samples}. These predictions "
              f"are ignored when computing the Poisson deviance.")

    print("mean Poisson deviance: %.3f" %
          mean_poisson_deviance(df_test["Frequency"][mask],
                                y_pred[mask],
                                sample_weight=df_test["Exposure"][mask]))


print("Constant mean frequency evaluation:")
score_estimator(dummy, df_test)

Out:

Constant mean frequency evaluation:
MSE: 0.564
MAE: 0.189
mean Poisson deviance: 0.625

(Generalized) linear models¶

We start by modeling the target variable with the (l2 penalized) least squares linear regression model, more comonly known as Ridge regression. We use a low penalization alpha, as we expect such a linear model to under-fit on such a large dataset.

from sklearn.linear_model import Ridge


ridge_glm = Pipeline([
    ("preprocessor", linear_model_preprocessor),
    ("regressor", Ridge(alpha=1e-6)),
]).fit(df_train, df_train["Frequency"],
       regressor__sample_weight=df_train["Exposure"])

The Poisson deviance cannot be computed on non-positive values predicted by the model. For models that do return a few non-positive predictions (e.g. Ridge) we ignore the corresponding samples, meaning that the obtained Poisson deviance is approximate. An alternative approach could be to use TransformedTargetRegressor meta-estimator to map y_pred to a strictly positive domain.

print("Ridge evaluation:")
score_estimator(ridge_glm, df_test)

Out:

Ridge evaluation:
MSE: 0.560
MAE: 0.177
WARNING: Estimator yields invalid, non-positive predictions  for 1315 samples out of 223745. These predictions are ignored when computing the Poisson deviance.
mean Poisson deviance: 0.601

Next we fit the Poisson regressor on the target variable. We set the regularization strength alpha to approximately 1e-6 over number of samples (i.e. 1e-12) in order to mimic the Ridge regressor whose L2 penalty term scales differently with the number of samples.

Since the Poisson regressor internally models the log of the expected target value instead of the expected value directly (log vs identity link function), the relationship between X and y is not exactly linear anymore. Therefore the Poisson regressor is called a Generalized Linear Model (GLM) rather than a vanilla linear model as is the case for Ridge regression.

from sklearn.linear_model import PoissonRegressor

n_samples = df_train.shape[0]

poisson_glm = Pipeline([
    ("preprocessor", linear_model_preprocessor),
    ("regressor", PoissonRegressor(alpha=1e-12, max_iter=300))
])
poisson_glm.fit(df_train, df_train["Frequency"],
                regressor__sample_weight=df_train["Exposure"])

print("PoissonRegressor evaluation:")
score_estimator(poisson_glm, df_test)

Out:

PoissonRegressor evaluation:
MSE: 0.560
MAE: 0.186
mean Poisson deviance: 0.594

Gradient Boosting Regression Trees for Poisson regression¶

Finally, we will consider a non-linear model, namely Gradient Boosting Regression Trees. Tree-based models do not require the categorical data to be one-hot encoded: instead, we can encode each category label with an arbitrary integer using OrdinalEncoder. With this encoding, the trees will treat the categorical features as ordered features, which might not be always a desired behavior. However this effect is limited for deep enough trees which are able to recover the categorical nature of the features. The main advantage of the OrdinalEncoder over the OneHotEncoder is that it will make training faster.

Gradient Boosting also gives the possibility to fit the trees with a Poisson loss (with an implicit log-link function) instead of the default least-squares loss. Here we only fit trees with the Poisson loss to keep this example concise.

from sklearn.experimental import enable_hist_gradient_boosting  # noqa
from sklearn.ensemble import HistGradientBoostingRegressor
from sklearn.preprocessing import OrdinalEncoder


tree_preprocessor = ColumnTransformer(
    [
        ("categorical", OrdinalEncoder(),
            ["VehBrand", "VehPower", "VehGas", "Region", "Area"]),
        ("numeric", "passthrough",
            ["VehAge", "DrivAge", "BonusMalus", "Density"]),
    ],
    remainder="drop",
)
poisson_gbrt = Pipeline([
    ("preprocessor", tree_preprocessor),
    ("regressor", HistGradientBoostingRegressor(loss="poisson",
                                                max_leaf_nodes=128)),
])
poisson_gbrt.fit(df_train, df_train["Frequency"],
                 regressor__sample_weight=df_train["Exposure"])

print("Poisson Gradient Boosted Trees evaluation:")
score_estimator(poisson_gbrt, df_test)

Out:

Poisson Gradient Boosted Trees evaluation:
MSE: 0.560
MAE: 0.184
mean Poisson deviance: 0.575

Like the Poisson GLM above, the gradient boosted trees model minimizes the Poisson deviance. However, because of a higher predictive power, it reaches lower values of Poisson deviance.

Evaluating models with a single train / test split is prone to random fluctuations. If computing resources allow, it should be verified that cross-validated performance metrics would lead to similar conclusions.

The qualitative difference between these models can also be visualized by comparing the histogram of observed target values with that of predicted values:

fig, axes = plt.subplots(nrows=2, ncols=4, figsize=(16, 6), sharey=True)
fig.subplots_adjust(bottom=0.2)
n_bins = 20
for row_idx, label, df in zip(range(2),
                              ["train", "test"],
                              [df_train, df_test]):
    df["Frequency"].hist(bins=np.linspace(-1, 30, n_bins),
                         ax=axes[row_idx, 0])

    axes[row_idx, 0].set_title("Data")
    axes[row_idx, 0].set_yscale('log')
    axes[row_idx, 0].set_xlabel("y (observed Frequency)")
    axes[row_idx, 0].set_ylim([1e1, 5e5])
    axes[row_idx, 0].set_ylabel(label + " samples")

    for idx, model in enumerate([ridge_glm, poisson_glm, poisson_gbrt]):
        y_pred = model.predict(df)

        pd.Series(y_pred).hist(bins=np.linspace(-1, 4, n_bins),
                               ax=axes[row_idx, idx+1])
        axes[row_idx, idx + 1].set(
            title=model[-1].__class__.__name__,
            yscale='log',
            xlabel="y_pred (predicted expected Frequency)"
        )
plt.tight_layout()

The experimental data presents a long tail distribution for y. In all models, we predict the expected frequency of a random variable, so we will have necessarily fewer extreme values than for the observed realizations of that random variable. This explains that the mode of the histograms of model predictions doesn’t necessarily correspond to the smallest value. Additionally, the normal distribution used in Ridge has a constant variance, while for the Poisson distribution used in PoissonRegressor and HistGradientBoostingRegressor, the variance is proportional to the predicted expected value.

Thus, among the considered estimators, PoissonRegressor and HistGradientBoostingRegressor are a-priori better suited for modeling the long tail distribution of the non-negative data as compared to the Ridge model which makes a wrong assumption on the distribution of the target variable.

The HistGradientBoostingRegressor estimator has the most flexibility and is able to predict higher expected values.

Note that we could have used the least squares loss for the HistGradientBoostingRegressor model. This would wrongly assume a normal distributed response variable as does the Ridge model, and possibly also lead to slightly negative predictions. However the gradient boosted trees would still perform relatively well and in particular better than PoissonRegressor thanks to the flexibility of the trees combined with the large number of training samples.

Evaluation of the calibration of predictions¶

To ensure that estimators yield reasonable predictions for different policyholder types, we can bin test samples according to y_pred returned by each model. Then for each bin, we compare the mean predicted y_pred, with the mean observed target:

from sklearn.utils import gen_even_slices


def _mean_frequency_by_risk_group(y_true, y_pred, sample_weight=None,
                                  n_bins=100):
    """Compare predictions and observations for bins ordered by y_pred.

    We order the samples by ``y_pred`` and split it in bins.
    In each bin the observed mean is compared with the predicted mean.

    Parameters
    ----------
    y_true: array-like of shape (n_samples,)
        Ground truth (correct) target values.
    y_pred: array-like of shape (n_samples,)
        Estimated target values.
    sample_weight : array-like of shape (n_samples,)
        Sample weights.
    n_bins: int
        Number of bins to use.

    Returns
    -------
    bin_centers: ndarray of shape (n_bins,)
        bin centers
    y_true_bin: ndarray of shape (n_bins,)
        average y_pred for each bin
    y_pred_bin: ndarray of shape (n_bins,)
        average y_pred for each bin
    """
    idx_sort = np.argsort(y_pred)
    bin_centers = np.arange(0, 1, 1/n_bins) + 0.5/n_bins
    y_pred_bin = np.zeros(n_bins)
    y_true_bin = np.zeros(n_bins)

    for n, sl in enumerate(gen_even_slices(len(y_true), n_bins)):
        weights = sample_weight[idx_sort][sl]
        y_pred_bin[n] = np.average(
            y_pred[idx_sort][sl], weights=weights
        )
        y_true_bin[n] = np.average(
            y_true[idx_sort][sl],
            weights=weights
        )
    return bin_centers, y_true_bin, y_pred_bin


print(f"Actual number of claims: {df_test['ClaimNb'].sum()}")
fig, ax = plt.subplots(nrows=2, ncols=2, figsize=(12, 8))
plt.subplots_adjust(wspace=0.3)

for axi, model in zip(ax.ravel(), [ridge_glm, poisson_glm, poisson_gbrt,
                                   dummy]):
    y_pred = model.predict(df_test)
    y_true = df_test["Frequency"].values
    exposure = df_test["Exposure"].values
    q, y_true_seg, y_pred_seg = _mean_frequency_by_risk_group(
        y_true, y_pred, sample_weight=exposure, n_bins=10)

    # Name of the model after the estimator used in the last step of the
    # pipeline.
    print(f"Predicted number of claims by {model[-1]}: "
          f"{np.sum(y_pred * exposure):.1f}")

    axi.plot(q, y_pred_seg, marker='x', linestyle="--", label="predictions")
    axi.plot(q, y_true_seg, marker='o', linestyle="--", label="observations")
    axi.set_xlim(0, 1.0)
    axi.set_ylim(0, 0.5)
    axi.set(
        title=model[-1],
        xlabel='Fraction of samples sorted by y_pred',
        ylabel='Mean Frequency (y_pred)'
    )
    axi.legend()
plt.tight_layout()

Out:

Actual number of claims: 11935.0
Predicted number of claims by Ridge(alpha=1e-06): 10692.9
Predicted number of claims by PoissonRegressor(alpha=1e-12, max_iter=300): 11932.0
Predicted number of claims by HistGradientBoostingRegressor(loss='poisson', max_leaf_nodes=128): 12109.6
Predicted number of claims by DummyRegressor(): 11931.2

The dummy regression model predicts a constant frequency. This model does not attribute the same tied rank to all samples but is none-the-less globally well calibrated (to estimate the mean frequency of the entire population).

The Ridge regression model can predict very low expected frequencies that do not match the data. It can therefore severly under-estimate the risk for some policyholders.

PoissonRegressor and HistGradientBoostingRegressor show better consistency between predicted and observed targets, especially for low predicted target values.

The sum of all predictions also confirms the calibration issue of the Ridge model: it under-estimates by more than 3% the total number of claims in the test set while the other three models can approximately recover the total number of claims of the test portfolio.

Evaluation of the ranking power¶

For some business applications, we are interested in the ability of the model to rank the riskiest from the safest policyholders, irrespective of the absolute value of the prediction. In this case, the model evaluation would cast the problem as a ranking problem rather than a regression problem.

To compare the 3 models from this perspective, one can plot the cumulative proportion of claims vs the cumulative proportion of exposure for the test samples order by the model predictions, from safest to riskiest according to each model.

This plot is called a Lorenz curve and can be summarized by the Gini index:

from sklearn.metrics import auc


def lorenz_curve(y_true, y_pred, exposure):
    y_true, y_pred = np.asarray(y_true), np.asarray(y_pred)
    exposure = np.asarray(exposure)

    # order samples by increasing predicted risk:
    ranking = np.argsort(y_pred)
    ranked_exposure = exposure[ranking]
    ranked_frequencies = y_true[ranking]
    ranked_exposure = exposure[ranking]
    cumulated_claims = np.cumsum(ranked_frequencies * ranked_exposure)
    cumulated_claims /= cumulated_claims[-1]
    cumulated_exposure = np.cumsum(ranked_exposure)
    cumulated_exposure /= cumulated_exposure[-1]
    return cumulated_exposure, cumulated_claims


fig, ax = plt.subplots(figsize=(8, 8))

for model in [dummy, ridge_glm, poisson_glm, poisson_gbrt]:
    y_pred = model.predict(df_test)
    cum_exposure, cum_claims = lorenz_curve(df_test["Frequency"], y_pred,
                                            df_test["Exposure"])
    gini = 1 - 2 * auc(cum_exposure, cum_claims)
    label = "{} (Gini: {:.2f})".format(model[-1], gini)
    ax.plot(cum_exposure, cum_claims, linestyle="-", label=label)

# Oracle model: y_pred == y_test
cum_exposure, cum_claims = lorenz_curve(df_test["Frequency"],
                                        df_test["Frequency"],
                                        df_test["Exposure"])
gini = 1 - 2 * auc(cum_exposure, cum_claims)
label = "Oracle (Gini: {:.2f})".format(gini)
ax.plot(cum_exposure, cum_claims, linestyle="-.", color="gray", label=label)

# Random Baseline
ax.plot([0, 1], [0, 1], linestyle="--", color="black",
        label="Random baseline")
ax.set(
    title="Lorenz curves by model",
    xlabel='Cumulative proportion of exposure (from safest to riskiest)',
    ylabel='Cumulative proportion of claims'
)
ax.legend(loc="upper left")

Out:

<matplotlib.legend.Legend object at 0x7f635c7b3d60>

As expected, the dummy regressor is unable to correctly rank the samples and therefore performs the worst on this plot.

The tree-based model is significantly better at ranking policyholders by risk while the two linear models perform similarly.

All three models are significantly better than chance but also very far from making perfect predictions.

This last point is expected due to the nature of the problem: the occurrence of accidents is mostly dominated by circumstantial causes that are not captured in the columns of the dataset and can indeed be considered as purely random.

The linear models assume no interactions between the input variables which likely causes under-fitting. Inserting a polynomial feature extractor (PolynomialFeatures) indeed increases their discrimative power by 2 points of Gini index. In particular it improves the ability of the models to identify the top 5% riskiest profiles.

Main takeaways¶

• The performance of the models can be evaluated by their ability to yield well-calibrated predictions and a good ranking.

• The calibration of the model can be assessed by plotting the mean observed value vs the mean predicted value on groups of test samples binned by predicted risk.

• The least squares loss (along with the implicit use of the identity link function) of the Ridge regression model seems to cause this model to be badly calibrated. In particular, it tends to underestimate the risk and can even predict invalid negative frequencies.

• Using the Poisson loss with a log-link can correct these problems and lead to a well-calibrated linear model.

• The Gini index reflects the ability of a model to rank predictions irrespective of their absolute values, and therefore only assess their ranking power.

• Despite the improvement in calibration, the ranking power of both linear models are comparable and well below the ranking power of the Gradient Boosting Regression Trees.

• The Poisson deviance computed as an evaluation metric reflects both the calibration and the ranking power of the model. It also makes a linear assumption on the ideal relationship between the expected value and the variance of the response variable. For the sake of conciseness we did not check whether this assumption holds.

• Traditional regression metrics such as Mean Squared Error and Mean Absolute Error are hard to meaningfully interpret on count values with many zeros.

plt.show()

Total running time of the script: ( 0 minutes 41.629 seconds)

Download Python source code: plot_poisson_regression_non_normal_loss.py

Download Jupyter notebook: plot_poisson_regression_non_normal_loss.ipynb

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